After doing a few manual scans however (using 'clamscan -ri') I'm finding infections in the account mail folder.
1. Is there a good guide to setting up ClamAV on a cPanel serve do do automatic mail scanning? I was under the impression that ClamAV scans emails also however after doing some reading people seem to recommend MailScanner.
2. My logwatch is giving me the following error.
The ClamAV update process (freshclam daemon) was not running! If you no longer wish to run freshclam, deleting the freshclam.log file will suppress this error message.
The freshclam daemon wasn't running so I've started it (freshclam --daemon). I've also checked the freshclam.conf file and the logrile is set as follows: UpdateLogFile /var/log/freshclam.log
Switch to Mailscanner if you wish. The people that make it allow you to open a ticket if you have issues with Mailscanner for free or you can contact cPanel support since its an issue with a cPanel made Plugin.