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Old 06-28-2005, 01:46 PM
voxio voxio is offline
Web Hosting Evangelist
Join Date: Jun 2004
Posts: 523

Cpanel update / up2date and yum problem

Im not sure whats happened here however when i run cpanel update i get the following log:

Hostname Virtual Host is already setup
PHP version file is up to date
Ftp Quota Check v1.0
Doing a manual update...
Cpanel updates are coming from
Buggy hardware detected!!
Skipping Disk Integrity Check
The following controllers have problems with S.M.A.R.T:
3ware PERCRAID 3w-xxx Promise and FastTrack
x - creating lock directory
x - SKIPPING /usr/local/lib/php.ini (file already exists)
Ftp Setup Script Version 6.0
Fetching version information from (RELEASE)....Done
This is the pure-ftpd 1.0.20 installer release number 10.tls for platform centos 3.4
pure-ftpd is up to date. Use ftpup --force to force a reinstall
checkyum version 20.0
Using Mysql4
bandmin is up to date (Sat Feb 5 13:36:19 2005)
chkservd is up to date (Thu Aug 19 13:05:17 2004)
portsentry is up to date (Tue Jan 29 20:02:40 2002)
Gathering header information file(s) from server(s)
Server: Centos-3 - i386/i686 - Addons
Server: Centos-3 - i386/i686 - Base
Server: Centos-3 - i386/i686 - Extras
Server: Centos-3 - i386/i686 - Updates
Finding updated packages
Downloading needed headers
Resolving dependencies
..Dependencies resolved
I will do the following:
[update: openssh-server 3.6.1p2-33.30.4.i386]
[update: bind-devel 20:9.2.4-7_EL3.i386]
[update: openssl-devel 0.9.7a-33.15.i386]
[update: gcc 3.2.3-52.i386]
[update: bind 20:9.2.4-7_EL3.i386]
[update: XFree86-devel 4.3.0-81.EL.i386]
[update: openssh-clients 3.6.1p2-33.30.4.i386]
[update: openssl 0.9.7a-33.15.i686]
[update: bind-utils 20:9.2.4-7_EL3.i386]
[update: sharutils 4.2.1-16.2.i386]
[update: XFree86-libs 4.3.0-81.EL.i386]
[update: openssh 3.6.1p2-33.30.4.i386]
[update: wget 1.9.1-16.EL3.1.i386]
I will install/upgrade these to satisfy the dependencies:
[deps: libgcc 3.2.3-52.i386]
[deps: XFree86-libs-data 4.3.0-81.EL.i386]
[deps: XFree86-xfs 4.3.0-81.EL.i386]
[deps: libf2c 3.2.3-52.i386]
[deps: gcc-g77 3.2.3-52.i386]
[deps: gcc-java 3.2.3-52.i386]
[deps: cpp 3.2.3-52.i386]
[deps: libobjc 3.2.3-52.i386]
[deps: gcc-objc 3.2.3-52.i386]
[deps: gcc-c++ 3.2.3-52.i386]
[deps: gcc-gnat 3.2.3-52.i386]
[deps: libgnat 3.2.3-52.i386]
Downloading Packages
Running test transaction:
Test transaction complete, Success!
Updated: openssh-server 3.6.1p2-33.30.4.i386 bind-devel 20:9.2.4-7_EL3.i386 openssl-devel 0.9.7a-33.15.i386 gcc 3.2.3-52.i386 bind 20:9.2.4-7_EL3.i386 XFree86-devel 4.3.0-81.EL.i386 openssh-clients 3.6.1p2-33.30.4.i386 openssl 0.9.7a-33.15.i686 bind-utils 20:9.2.4-7_EL3.i386 sharutils 4.2.1-16.2.i386 XFree86-libs 4.3.0-81.EL.i386 openssh 3.6.1p2-33.30.4.i386 wget 1.9.1-16.EL3.1.i386
Dep Installed: libgcc 3.2.3-52.i386 XFree86-libs-data 4.3.0-81.EL.i386 XFree86-xfs 4.3.0-81.EL.i386 libf2c 3.2.3-52.i386 gcc-g77 3.2.3-52.i386 gcc-java 3.2.3-52.i386 cpp 3.2.3-52.i386 libobjc 3.2.3-52.i386 gcc-objc 3.2.3-52.i386 gcc-c++ 3.2.3-52.i386 gcc-gnat 3.2.3-52.i386 libgnat 3.2.3-52.i386
Transaction(s) Complete
gd is installed and is the latest version.
gd-devel is installed and is the latest version.
gd-progs is installed and is the latest version.
expect is installed and is the latest version.
freetype is installed and is the latest version.
freetype-devel is installed and is the latest version.
gnupg is installed and is the latest version.
lynx is installed and is the latest version.
perl-CPAN is installed and is the latest version.
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: db4 error(13) from db->close: Permission denied
error: cannot open Packages index using db3 - Permission denied (13)
error: cannot open Packages database in /var/lib/rpm

Gathering header information file(s) from server(s)
Server: Centos-3 - i386/i686 - Addons
Server: Centos-3 - i386/i686 - Base
Server: Centos-3 - i386/i686 - Extras
Server: Centos-3 - i386/i686 - Updates
Finding updated packages
Downloading needed headers
Resolving dependencies
Dependencies resolved
I will do the following:
[install: kernel 2.4.21-32.0.1.EL.i686]
[update: openssh-clients 3.6.1p2-33.30.4.i386]
[update: hotplug 3:2002_04_01-20.4.i386]
[update: glibc-utils 2.3.2-95.33.i386]
[update: devlabel 0.48.03-10.i386]
[update: util-linux 2.11y-31.6.i386]
[update: rpm 4.2.3-21_nonptl.i386]
[update: binutils]
[update: openssh-server 3.6.1p2-33.30.4.i386]
[update: nscd 2.3.2-95.33.i386]
[update: XFree86-Mesa-libGLU 4.3.0-81.EL.i386]
[update: initscripts 7.31.22.EL-2.centos.i386]
[update: bind-devel 20:9.2.4-7_EL3.i386]
[update: libstdc++-devel 3.2.3-52.i386]
[update: rh-postgresql-devel 7.3.10-1.i386]
[update: openssl-devel 0.9.7a-33.15.i386]
[update: gcc 3.2.3-52.i386]
[update: libgcc 3.2.3-52.i386]
[update: rpmdb-redhat 3.5-0.20050526.i386]
[update: losetup 2.11y-31.6.i386]
[update: libgcj 3.2.3-52.i386]
[update: vixie-cron 3.0.1-76_EL3.i386]
[update: raidtools 1.00.3-8.EL3.i386]
[update: quota 1:3.10-7.i386]
[update: curl-devel 7.10.6-6.rhel3.i386]
[update: glibc-profile 2.3.2-95.33.i386]
[update: ipsec-tools 0.2.5-0.7.i386]
[update: procps 2.0.17-13.7.i386]
[update: XFree86-libs-data 4.3.0-81.EL.i386]
[update: XFree86-xfs 4.3.0-81.EL.i386]
[update: krb5-workstation 1.2.7-44.i386]
[update: mkinitrd]
[update: libf2c 3.2.3-52.i386]
[update: iscsi-initiator-utils 3.6.2-7.i386]
[update: pam-devel 0.75-64.i386]
[update: bind 20:9.2.4-7_EL3.i386]
[update: man-pages-ja 20041215-1.EL3.noarch]
[update: net-snmp-libs 5.0.9-2.30E.15.i386]
[update: usermode 1.68-5E.3.i386]
[update: ntsysv]
[update: centos-release 3:3-5.3.i386]
[update: glibc 2.3.2-95.33.i686]
[update: comps 3.5centos.0-0.20040916.i386]
[update: XFree86-devel 4.3.0-81.EL.i386]
[update: mount 2.11y-31.6.i386]
[update: kudzu-devel]
[update: kernel-utils 1:2.4-8.37.12.i386]
[update: hwdata 0.101.17-1.noarch]
[update: rpm-devel 4.2.3-21_nonptl.i386]
[update: kudzu]
[update: gtk2 2.2.4-15.i386]
[update: net-snmp-devel 5.0.9-2.30E.15.i386]
[update: gdb]
[update: rpm-libs 4.2.3-21_nonptl.i386]
[update: grep 2.5.1-24.4.i386]
[update: authconfig 4.3.7-3.i386]
[update: mailx 8.1.1-31.EL3.i386]
[update: sysklogd 1.4.1-26_EL3.i386]
[update: rmt 0.4b37-1E.i386]
[update: laus 0.1-70RHEL3.i386]
[update: libstdc++ 3.2.3-52.i386]
[update: pstack 1.2-3.EL.2.i386]
[update: chkconfig]
[update: psmisc 21.3-2.i386]
[update: gcc-g77 3.2.3-52.i386]
[update: gcc-java 3.2.3-52.i386]
[update: jpackage-utils 1.5.38-1jpp_5rh.noarch]
[update: telnet 1:0.17-26.EL3.3.i386]
[update: openssl096b 0.9.6b-16.22.3.i386]
[update: dump 0.4b37-1E.i386]
[update: lvm 1.0.8-12.2.i386]
[update: popt 1.8.2-21_nonptl.i386]
[update: openssl 0.9.7a-33.15.i686]
[update: ltrace 0.3.36-2.EL3.i386]
[update: libgcj-devel 3.2.3-52.i386]
[update: glibc-devel 2.3.2-95.33.i386]
[update: net-tools 1.60-20E.7.i386]
[update: db4 4.1.25-8.1.i386]
[update: bzip2 1.0.2-11.EL3.4.i386]
[update: ncurses-devel 5.3-9.4.i386]
[update: db4-devel 4.1.25-8.1.i386]
[update: glibc-common 2.3.2-95.33.i386]
[update: bonobo-activation 2.2.2-1.2E.i386]
[update: bind-utils 20:9.2.4-7_EL3.i386]
[update: nss_ldap 207-15.i386]
[update: nptl-devel 2.3.2-95.33.i686]
[update: mktemp 1.5-18.2.i386]
[update: cvs 1.11.2-27.i386]
[update: gzip 1.3.3-12.rhel3.i386]
[update: sharutils 4.2.1-16.2.i386]
[update: strace 4.5.9-2.EL3.i386]
[update: bind-libs 20:9.2.4-7_EL3.i386]
[update: cpp 3.2.3-52.i386]
[update: laus-libs 0.1-70RHEL3.i386]
[update: rh-postgresql-libs 7.3.10-1.i386]
[update: gnome-vfs2 2.2.5-2E.3.2.i386]
[update: XFree86-Mesa-libGL 4.3.0-81.EL.i386]
[update: tcpdump 14:3.7.2-7.E3.5.i386]
[update: net-snmp 5.0.9-2.30E.15.i386]
[update: lsof 4.63-4.1.i386]
[update: tzdata 2005f-1.EL3.noarch]
[update: parted 1.6.3-29.5.i386]
[update: openmotif 2.2.3-5.RHEL3.2.i386]
[update: redhat-config-securitylevel-tui]
[update: libobjc 3.2.3-52.i386]
[update: ncurses 5.3-9.4.i386]
[update: netdump 0.7.7-2.i386]
[update: crash 3.10-10.centos.0.i386]
[update: sysreport]
[update: gcc-objc 3.2.3-52.i386]
[update: bash 2.05b-41.4.centos.0.i386]
[update: XFree86-libs 4.3.0-81.EL.i386]
[update: glibc-headers 2.3.2-95.33.i386]
[update: openssh 3.6.1p2-33.30.4.i386]
[update: gcc-c++ 3.2.3-52.i386]
[update: rsh 0.17-17.6.i386]
[update: gcc-gnat 3.2.3-52.i386]
[update: db4-utils 4.1.25-8.1.i386]
[update: diskdumputils 1.0.1-4.i386]
[update: rpm-python 4.2.3-21_nonptl.i386]
[update: wget 1.9.1-16.EL3.1.i386]
[update: curl 7.10.6-6.rhel3.i386]
[update: rpm-build 4.2.3-21_nonptl.i386]
[update: krb5-libs 1.2.7-44.i386]
[update: centos-yumcache 3.1-0.20050526.3.noarch]
[update: pam_krb5 1.75-1.i386]
[update: bzip2-libs 1.0.2-11.EL3.4.i386]
[update: bzip2-devel 1.0.2-11.EL3.4.i386]
[update: shadow-utils 2:4.0.3-23.08.i386]
[update: libgnat 3.2.3-52.i386]
[update: krb5-devel 1.2.7-44.i386]
[update: pam 0.75-64.i386]
[update: XFree86-font-utils 4.3.0-81.EL.i386]
Downloading Packages
Running test transaction:
Test transaction complete, Success!
Kernel Updated/Installed, checking for bootloader
Grub found - making this kernel the default
Installed: kernel 2.4.21-32.0.1.EL.i686
Updated: openssh-clients 3.6.1p2-33.30.4.i386 hotplug 3:2002_04_01-20.4.i386 glibc-utils 2.3.2-95.33.i386 devlabel 0.48.03-10.i386 util-linux 2.11y-31.6.i386 rpm 4.2.3-21_nonptl.i386 binutils openssh-server 3.6.1p2-33.30.4.i386 nscd 2.3.2-95.33.i386 XFree86-Mesa-libGLU 4.3.0-81.EL.i386 initscripts 7.31.22.EL-2.centos.i386 bind-devel 20:9.2.4-7_EL3.i386 libstdc++-devel 3.2.3-52.i386 rh-postgresql-devel 7.3.10-1.i386 openssl-devel 0.9.7a-33.15.i386 gcc 3.2.3-52.i386 libgcc 3.2.3-52.i386 rpmdb-redhat 3.5-0.20050526.i386 losetup 2.11y-31.6.i386 libgcj 3.2.3-52.i386 vixie-cron 3.0.1-76_EL3.i386 raidtools 1.00.3-8.EL3.i386 quota 1:3.10-7.i386 curl-devel 7.10.6-6.rhel3.i386 glibc-profile 2.3.2-95.33.i386 ipsec-tools 0.2.5-0.7.i386 procps 2.0.17-13.7.i386 XFree86-libs-data 4.3.0-81.EL.i386 XFree86-xfs 4.3.0-81.EL.i386 krb5-workstation 1.2.7-44.i386 mkinitrd libf2c 3.2.3-52.i386 iscsi-initiator-utils 3.6.2-7.i386 pam-devel 0.75-64.i386 bind 20:9.2.4-7_EL3.i386 man-pages-ja 20041215-1.EL3.noarch net-snmp-libs 5.0.9-2.30E.15.i386 usermode 1.68-5E.3.i386 ntsysv centos-release 3:3-5.3.i386 glibc 2.3.2-95.33.i686 comps 3.5centos.0-0.20040916.i386 XFree86-devel 4.3.0-81.EL.i386 mount 2.11y-31.6.i386 kudzu-devel kernel-utils 1:2.4-8.37.12.i386 hwdata 0.101.17-1.noarch rpm-devel 4.2.3-21_nonptl.i386 kudzu gtk2 2.2.4-15.i386 net-snmp-devel 5.0.9-2.30E.15.i386 gdb rpm-libs 4.2.3-21_nonptl.i386 grep 2.5.1-24.4.i386 authconfig 4.3.7-3.i386 mailx 8.1.1-31.EL3.i386 sysklogd 1.4.1-26_EL3.i386 rmt 0.4b37-1E.i386 laus 0.1-70RHEL3.i386 libstdc++ 3.2.3-52.i386 pstack 1.2-3.EL.2.i386 chkconfig psmisc 21.3-2.i386 gcc-g77 3.2.3-52.i386 gcc-java 3.2.3-52.i386 jpackage-utils 1.5.38-1jpp_5rh.noarch telnet 1:0.17-26.EL3.3.i386 openssl096b 0.9.6b-16.22.3.i386 dump 0.4b37-1E.i386 lvm 1.0.8-12.2.i386 popt 1.8.2-21_nonptl.i386 openssl 0.9.7a-33.15.i686 ltrace 0.3.36-2.EL3.i386 libgcj-devel 3.2.3-52.i386 glibc-devel 2.3.2-95.33.i386 net-tools 1.60-20E.7.i386 db4 4.1.25-8.1.i386 bzip2 1.0.2-11.EL3.4.i386 ncurses-devel 5.3-9.4.i386 db4-devel 4.1.25-8.1.i386 glibc-common 2.3.2-95.33.i386 bonobo-activation 2.2.2-1.2E.i386 bind-utils 20:9.2.4-7_EL3.i386 nss_ldap 207-15.i386 nptl-devel 2.3.2-95.33.i686 mktemp 1.5-18.2.i386 cvs 1.11.2-27.i386 gzip 1.3.3-12.rhel3.i386 sharutils 4.2.1-16.2.i386 strace 4.5.9-2.EL3.i386 bind-libs 20:9.2.4-7_EL3.i386 cpp 3.2.3-52.i386 laus-libs 0.1-70RHEL3.i386 rh-postgresql-libs 7.3.10-1.i386 gnome-vfs2 2.2.5-2E.3.2.i386 XFree86-Mesa-libGL 4.3.0-81.EL.i386 tcpdump 14:3.7.2-7.E3.5.i386 net-snmp 5.0.9-2.30E.15.i386 lsof 4.63-4.1.i386 tzdata 2005f-1.EL3.noarch parted 1.6.3-29.5.i386 openmotif 2.2.3-5.RHEL3.2.i386 redhat-config-securitylevel-tui libobjc 3.2.3-52.i386 ncurses 5.3-9.4.i386 netdump 0.7.7-2.i386 crash 3.10-10.centos.0.i386 sysreport gcc-objc 3.2.3-52.i386 bash 2.05b-41.4.centos.0.i386 XFree86-libs 4.3.0-81.EL.i386 glibc-headers 2.3.2-95.33.i386 openssh 3.6.1p2-33.30.4.i386 gcc-c++ 3.2.3-52.i386 rsh 0.17-17.6.i386 gcc-gnat 3.2.3-52.i386 db4-utils 4.1.25-8.1.i386 diskdumputils 1.0.1-4.i386 rpm-python 4.2.3-21_nonptl.i386 wget 1.9.1-16.EL3.1.i386 curl 7.10.6-6.rhel3.i386 rpm-build 4.2.3-21_nonptl.i386 krb5-libs 1.2.7-44.i386 centos-yumcache 3.1-0.20050526.3.noarch pam_krb5 1.75-1.i386 bzip2-libs 1.0.2-11.EL3.4.i386 bzip2-devel 1.0.2-11.EL3.4.i386 shadow-utils 2:4.0.3-23.08.i386 libgnat 3.2.3-52.i386 krb5-devel 1.2.7-44.i386 pam 0.75-64.i386 XFree86-font-utils 4.3.0-81.EL.i386
Transaction(s) Complete
Testing connection speed...(this could take a while)....Done
GD installed ok
Sync Source:
Fetching @
Fetching @
initfpsuexec: using apache 1.x support
Fetching ()....@
Versions Match! (10.2.0-RELEASE_82). You are running the latest RELEASE.
Fetching @
Updating addon typecripts addon:AdvancedGuestBook version:2.3.1-1.0.......Done
Updating addon typecripts addon:Geeklog version:1.3.11-1.1.......Done
Updating addon typecripts addon:InvisionBoard version:1.0.......Done
Updating addon typecripts addon:MamboOpenSource version:4.5.1b-1.0.......Done
Updating addon typecripts addonhpWiki version:1.0.......Done
Updating addon typecripts addonostNuke version:0.750-1.0.......Done
Updating addon typecripts addon:WordPress version:1.5-1.0.......Done
Updating addon typecripts addon:cPSupport version:0-0.8.6.....Fetching @
..Fetching @
Updating addon typecripts addon:e107 version:0.617-1.0.......Done
Updating addon typecripts addon:phpBB version:2.0.15-1.0.......Done
Fetching @
Fetching @
Fetching @
Updating addon type:modules addon:clamavconnector version:0.85.1-1.0.......Done
Updating addon type:modules addon:cronconfig version:0.4.......Done
Updating addon type:modules addon:modbandwidth version:2.0.4-0.8.......Done
Updating addon type:modules addon:modsecurity version:1.8.7-1.00RC1.......Done
Updating addon type:modules addon:pro version:1.0rc26.......Done
Updating addon type:modules addonpamdconf version:0.5.......Done
Rebuilding Process List...Done
Scanning suexec_log.Done

I have highlighted the area in bold which is causing a problem.

any ideas as to why this is happening?

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