I went to use an IP address from the list of 5 available on one server and saw that the hostname had mysteriously moved from the base IP of the server up to this one. I didn't do it, and I am not sure how it happened. It wasn't like that just a few days ago, and the hostname was set well before that.
I dug through WHM to find a way to restore it, and didn't find a way... I dug through various files on SSL, and none said the same thing WHM said. So I deleted the hostname, assigned a new one and it pointed to the base IP again. But, the old one is still there, on the other IP address. I even deleted and then re-added that IP, and the old hostname came right back up with it.