i was previously using cpanel on a server and i found

/home/user/public_html/ -> http://domain.com/
/home/user/public_html/cgi-bin/ -> http://domain.com/cgi-bin/
/home/user/public_html/subdomain/ -> http://subdomain.domain.com/
and more:
/home/user/mail/ for emails
/home/user/logs/ for achieve of logs after stats run
/home/user/etc/ for conf files
.
.




now i'm using virtozzo technology vps, and webmin doesn't work properly for the following file system

/home/user/domain.tld/html/ -> http://domain.com/
/home/user/domain.tld/cgi-bin/ -> http://domain.com/cgi-bin/
/home/user/subdomain.domain.tld/ -> http://subdomain.domain.com/
and more:
/home/user/domain/logs/ for achieve of RAW logs
.
.



i'm confused of what should be the default setting of general distribution of linux?